Chordata > Actinopterygii > Siluriformes > Siluridae > Ompok > Ompok pabda (Hamilton, 1822) This makes is almost impossible to detect the glass catfish (Kryptopterus). But MAKER v3.0 pipeline [10] was used for structural annotation. In southern and southeastern Asia, Ompok are favorite food fish, despite the fact that they are comparatively small. Dhar R, Pethusamy K, Singh S, Mukherjee I, Seethy A, Sengupta B, et al. Keeping The situation Stocking density@40000 /hectare (Debnath et al., 2015) All authors reviewed the manuscript. Bioinformatics. Also occur in canals, beels and inundated fields (Ref. pattern on the body fit very good to the description of Ompok pabda. 6028). Bangladesh is a country with thousands of rivers and ponds and is notable for being a fish-loving nation, acquiring the name "Machh-e Bhat-e Bangali" which means, "Bengali by fish and rice". Find near, nearer or same sized spp. The authors like to thank Joydeep Karmakar for sample collection and the entire department of Biochemistry, AIIMS Delhi for providing support, infrastructure and logistic to work. Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase update, a database of eukaryotic repetitive elements. It has the native range in India, Afghanistan, Pakistan, Bangladesh and Myanmar ; and is commonly found in natural waterbodies like rivers, lakes and flood plains [1-3,5]. They are [���] The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. The scientific name is Ompok Pabda. The quality and quantity of the isolated genomic DNA was checked on NanoDrop followed by 0.8% Agarose gel. However, Ompok become much larger! These include cookies, which are necessary for the control of our commercial business objectives, which are used exclusively for anonymous statistical purposes, for comfort settings or for the presentation of personalised content. Manage cookies/Do not sell my data we use in the preference centre. In the Benchmarking Universal Single-Copy Orthologs, International Union for conservation of nature. Rawat P, Biswas P, Jena AK, Patel AB, Pandey PK. 4833) Adults are found in quiet, shallow (0.5-1.5 m), often muddy water, in sandy streams, rivers and tanks (Ref. Feed on vegetable matter and fish (Ref. From India alone 21 This research is jointly funded by RD and SK. Google Scholar. © 2020 BioMed Central Ltd unless otherwise stated. The data described in this Data note can be freely and openly accessed via figshare, Refer Table 1 for details and links. Systematic position Phylum: Chordata Class: Actinopterygii (Ray-finned fishes) Order: Siluriformes (Catfishes) Superfamily: Siluroidea Family: Siluridae (Sheatfishes) Genus: Ompok Species: O. pabda Common/ local names English: Pabdah catfish Bangladesh: Madhu pabda (爨�爨о�� 爨�爨鉦Μ爨�爨�) and Pabda (爨�爨鉦Μ爨�爨�) India: Leothari, Pahboh (Assam); Pabda, ���read more Dhar R, Pethusamy K, Singh S, Mukherjee I, Seethy A, Sengupta B, et al. For catfish grow-out some farmers use a mixture of 40% fish meal, 40% to the very soft flesh. The genome assembly has been deposited in the NCBI GeneBank under the Bioproject ID: PRJNA552450 (Table 3). The authors declare that they have no competing interests. It is nice to know this (a revelation), because there are other fish, common to the Bengali palate, which do not actually Es handelt sich aufgrund der sehr langen Barteln und der Marmorzeichnung am Körper höchstwahrscheinlich um Ompok pabda. Muscle tissue was dissected from this fish and high-molecular weight genomic DNAs was purified from one specimen using Qiagen Genomic-tip 100/G as per the manufacturer’s instruction. and southeastern Asia, Ompok are favorite food fish, despite the fact Privacy original distribution of the species, because fingerlings are sent over These cookies are essential for the website. Pabda fish is a freshwater catfish, with its fabulous taste and high nutritional value. [2][4] Giklaseklase sa IUCN ang kaliwatan sa duolang mibahad. Catfishes are an excellent source of omega-3 and omega-6 fatty acids, vitamins and mineral those are excellent for growing children, pregnant females and elders. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Biswas P, Jena AK, Saha H, Chowdhury TG. MaSuRCA (Maryland Super- Read Celera Assembler) v3.2.8 was used for hybrid de novo assembly [8] using both the Illumina and PacBio data. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/, https://doi.org/10.6084/m9.figshare.9827312.v1, https://doi.org/10.6084/m9.figshare.9830954.v1, https://doi.org/10.6084/m9.figshare.9831155.v1, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA552450, https://www.ncbi.nlm.nih.gov/assembly/GCA_009108245.1/, http://creativecommons.org/licenses/by/4.0/, http://creativecommons.org/publicdomain/zero/1.0/, https://doi.org/10.1186/s13104-019-4867-y. World Aquac. Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore Holt, Alvarado C, Yandell M. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. In southern Ompok is a genus of fish in the family Siluridae found in lakes and large rivers throughout South and Southeast Asia. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. https://doi.org/10.1186/s13104-019-4867-y, DOI: https://doi.org/10.1186/s13104-019-4867-y. Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. The assembled genome size of the Indian butter catfish is 718 MB as compared to in silico estimated genome size of 992 Mb. Fish, in Bangladesh where malnutrition remains a significant development challenge, is an irreplaceable animal-source food in the diet of millions. Wels (Silurus glanis). SK and RD conceptualized, designed the overall project with assistance from AS and BS. Part of our customers: the fish have code 439752 (O. bimaculatus) and 439853 So it has a great demand and high value in the market. 1479). We are produce Pabda Fish Seed at Bangla Krishi Khamar we produce for Ponds , Biofloc & RAS System Fish Farming is the fastest growing animal farming business today. 1991, 1993). The draft genome assembly was found to be 718 Mb with N50 size of 81 kb. 2012;1(2):45–55. FastQC program.https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. Cookies policy. They help to make the website usable and enable, for example, security-relevant functionalities. Pabda fish is a freshwater catfish, with its fabulous taste and high nutritional value. 2008;18(1):188–96. wide distances for stocking fish ponds. 2009;84(4):395–407. Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India, Ruby Dhar, Karthikeyan Pethusamy, Sunil Singh, Indrani Mukherjee, Ashikh Seethy, Bharoti Sengupta, Tryambak Srivastava, Sajib Sarkar & Subhradip Karmakar, Eurofins Genomics India Pvt Ltd, Bangalore, India, Vikramjit Mandal, Madhumita Karmakar & Arpita Ghosh, Department of Industrial Fish and Fisheries, Bramhananda Keshab Chandra College, West Bengal State University, Kolkata, India, You can also search for this author in that they are comparatively small. 6028). 2019. https://doi.org/10.6084/m9.figshare.9831155.v1. Omopk 2010. http://dx.doi.org/10.2305/IUCN.UK.2010-4.RLTS.T166616A6248140.en. Two pair-end libraries were constructed for Illumina sequencing and one SMRTbell library was constructed for Pacific Bioscience Sequel, single molecule, real time (SMRT, Single Molecule Real Time) sequencing platforms as mentioned in Table 1, Date file 1. Bioinformatics. It is very tasty and has high nutrition value. Roppe Cove Base Adhesive Msds, Dogwood Bark For Medicine, Juniors High Chair Price, Honeywell Advanced Quietset Review, Pagoda House Lockport, Red Rooster Pub Menu, Yamaha Electric Guitar Package Eg112gpii, Frigidaire Fgrc084wa1 Amazon, " />

ompok pabda fish

this fact nevertheless shows that there is a lot of variation in the Mishra SS, Acharjee SK, Chakraborty SK. Ompok are medium sized catfish that reach a length of 15-40 cm. Buchfink B, Xie C, Huson DH. Dhar R, Pethusamy K, Singh S, Mukherjee I, Seethy A, Sengupta B, et al. And no matter how much you crave them, avoid katla (Catla catla), bhetki (Lates calcarifer), chital (Chitala chitala), pabda (Ompok pabda) and tangra (Mystus aor) fish, whether they are steamed or fried, dry or in a curry. Liu Z, Liu S, Yao J, Bao L, Zhang J, Li Y, Jiang C, Sun L, Wang R, Zhang Y, Zhou T. The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts. The IUCN Red List of Threatened Species. determination of species of Ompok is very difficult. Present study ��� Subhradip Karmakar. 45335 ) . The traditional fishing gears like Jhakijal (cast net), and Dughair (conical trap) were used to catch the specimen and preserved in 10% formalin. The taxonomic identification of this fish has been confirmed following standard taxonomic keys like studying the fin formula and other standard morphological characteristics. Bangladesh J. They are called “butter catfish” due 2005;110(1–4):462–7. Banik S, Goswami P, Acharjee T, Malla S. Ompok pabda (Hamilton-Buchanan, 1822): an endangered catfish of Tripura, India: reproductive physiology related to freshwater lotic environment. Mit den Ompok, die sie bisher importierten, haben diese Fische wenig gemein, sie sehen eher aus wie [���] Max length : 45.0 cm SL male/unsexed; (Ref. J Environ Biol. GC content of the genome was determined to be 38.84%. A lot of species Ompok old spawning, synonyms pabdah fish english pabda. Pabda is largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. Cytogenet Genome Res. Pabda Fish Seed Suppliers : We are Pabda Fish Seed Suppliers , Wholesaler Pabda Fish Seed ��� We Wholesale , manufacturer of Pabda Fish Seed in West Bengal, India. Altogether, 21,371 genes were predicted by the MAKER gene annotation pipeline using proteins from channel catfish. Article  Table 2.doc. A total of 80 individuals of Ompok pabda were sampled from four coastal rivers located in the southeastern coastal region of Bangladesh from January, 2014 to August, 2014 (Table I). Please note that we exclusively supply the We also received our specimens from India. 2015;31(19):3210–2. Knowing the complete genome of this fish will help in better understanding of the genome organization, evolution as well as for conservation and farming applications [6]. Overexploitation for food is a major threat and has resulted in remarkable population decline [4, 5]. Article  Ompok Most The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. The quality of the reads was checked using FastQC (Table 1) [7]. Dhar, R., Pethusamy, K., Singh, S. et al. Among the Ompok species, O. bimaculatus is the most cultured species in India The pabda fish is generally cultured in the ponds along with some other carp fish species (Rohu, Mrigal, Katla) Monoculture: Only O. bimaculatus is cultured. Belonging an the from for sl. BMC Research Notes Nat Methods. 2015;12(1):59. The MaSuRCA genome assembler. They are You decide for which category you want to allow cookies. Ompok pabda, locally known as "modhu pabda" is a commercially important catfish for aquaculture, capture fisheries and conservation in Bangladesh. The physical characteristics of ��� to evaluate certain characters, like coloration or body indexes. The relationship of fecundity with total length and total body weight of the fish was Log F = 0.374 Log L+ 0.37, r2 = 0.999 and Log F = 0.337 Log W-0.40, r2 = 0.966. The specific epithet comes from pabda, the Bengali name of the fish. A widespread specieshaving been recorded in Afghanistan, India, Pakistan, Nepal, Bangladesh, Sri Lanka, China, Myanmar, Thailand, Cambodia, Laos, Vietnam and Indonesia. (O. pabda) on our stocklist. volume 12, Article number: 825 (2019) figshare. Ompok pabda, commonly known as pabda catfish, is an indigenous freshwater fish species widely cultured along India, Bangladesh, Pakistan, Afghanistan and Myanmar. Out of the 21,371 genes, 20,923 were annotated using Diamond [13] (BlastX mode) against NCBI ‘NR’ database and 5589 genes were found to have GO (Gene Ontology) term assigned to them. other fish that are not suitable to be eaten, Ompok are absolutely Google Scholar. This involves steeping up of breeding process, as well as to identify lineage specific changes that are critical for its adaptation besides knowing about the risk factors as well as its immune system that helps in its survival in the wild or in captivity. Ilish is the national fish of the country where it contributes 13% of country's total fish production. Smit A, Hubley R, Green P. RepeatMasker Open-4.0. 2016;7:11757. The BUSCO v3 [9] analysis revealing 85.7% completeness, indicating the genome to be of good quality. © 2005-2020 Aquarium Glaser GmbH - Alle Rechte vorbehalten. Ompok pabda is a different species! California Privacy Statement, Draft genome of Ompok bimaculatus (Pabda fish). species and that different scientist have different points of view how This species is an indigenous catfish ��� RepeatMasker v4.0.9 was used with the latest version of Repbase database [11, 12], repeat elements identified were 7.87%. 2019;40(4):661–7. BMC Res Notes 12, 825 (2019). Thailand for food purposes. Una ning gihulagway ni Hamilton ni adtong 1822. Environ Biol Fishes. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. ca. Ompok look quite similar to the Wels. That���s why; demand and market price of the fishes are comparatively high. descritions exist (currently 47), but only 27 are regarded as valid Pabda Fish is a  freshwater fish species. Ompok species in aquaria is not difficult and is comparable to keeping Genome Res. Correspondence to Classification / Names Common names | Synonyms | Catalog of Fishes ( gen. , sp. ) India. Cite this article. bimaculatus has been described already in 1794. Il faudra veiller à les maintenir dans une ��� figshare. The genome of Ompok bimaculatus (Fig. We use cookies to optimize our website for you and to continuously improve it. https://www.ncbi.nlm.nih.gov/assembly/GCA_009108245.1/. 1: Table 1, Data file 3) from Ganges river, has been sequenced by hybrid approach using Illumina short reads and PacBio long reads followed by structural annotations. Comment maintenir les ompok pabda (ompok pabda) en aquarium ? Nat Commun. By using this website, you agree to our Ompok pabda (Hamilton, 1822) Accepted Name Butter catfish Animalia > Chordata > Actinopterygii > Siluriformes > Siluridae > Ompok > Ompok pabda (Hamilton, 1822) This makes is almost impossible to detect the glass catfish (Kryptopterus). But MAKER v3.0 pipeline [10] was used for structural annotation. In southern and southeastern Asia, Ompok are favorite food fish, despite the fact that they are comparatively small. Dhar R, Pethusamy K, Singh S, Mukherjee I, Seethy A, Sengupta B, et al. Keeping The situation Stocking density@40000 /hectare (Debnath et al., 2015) All authors reviewed the manuscript. Bioinformatics. Also occur in canals, beels and inundated fields (Ref. pattern on the body fit very good to the description of Ompok pabda. 6028). Bangladesh is a country with thousands of rivers and ponds and is notable for being a fish-loving nation, acquiring the name "Machh-e Bhat-e Bangali" which means, "Bengali by fish and rice". Find near, nearer or same sized spp. The authors like to thank Joydeep Karmakar for sample collection and the entire department of Biochemistry, AIIMS Delhi for providing support, infrastructure and logistic to work. Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase update, a database of eukaryotic repetitive elements. It has the native range in India, Afghanistan, Pakistan, Bangladesh and Myanmar ; and is commonly found in natural waterbodies like rivers, lakes and flood plains [1-3,5]. They are [���] The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. The scientific name is Ompok Pabda. The quality and quantity of the isolated genomic DNA was checked on NanoDrop followed by 0.8% Agarose gel. However, Ompok become much larger! These include cookies, which are necessary for the control of our commercial business objectives, which are used exclusively for anonymous statistical purposes, for comfort settings or for the presentation of personalised content. Manage cookies/Do not sell my data we use in the preference centre. In the Benchmarking Universal Single-Copy Orthologs, International Union for conservation of nature. Rawat P, Biswas P, Jena AK, Patel AB, Pandey PK. 4833) Adults are found in quiet, shallow (0.5-1.5 m), often muddy water, in sandy streams, rivers and tanks (Ref. Feed on vegetable matter and fish (Ref. From India alone 21 This research is jointly funded by RD and SK. Google Scholar. © 2020 BioMed Central Ltd unless otherwise stated. The data described in this Data note can be freely and openly accessed via figshare, Refer Table 1 for details and links. Systematic position Phylum: Chordata Class: Actinopterygii (Ray-finned fishes) Order: Siluriformes (Catfishes) Superfamily: Siluroidea Family: Siluridae (Sheatfishes) Genus: Ompok Species: O. pabda Common/ local names English: Pabdah catfish Bangladesh: Madhu pabda (爨�爨о�� 爨�爨鉦Μ爨�爨�) and Pabda (爨�爨鉦Μ爨�爨�) India: Leothari, Pahboh (Assam); Pabda, ���read more Dhar R, Pethusamy K, Singh S, Mukherjee I, Seethy A, Sengupta B, et al. For catfish grow-out some farmers use a mixture of 40% fish meal, 40% to the very soft flesh. The genome assembly has been deposited in the NCBI GeneBank under the Bioproject ID: PRJNA552450 (Table 3). The authors declare that they have no competing interests. It is nice to know this (a revelation), because there are other fish, common to the Bengali palate, which do not actually Es handelt sich aufgrund der sehr langen Barteln und der Marmorzeichnung am Körper höchstwahrscheinlich um Ompok pabda. Muscle tissue was dissected from this fish and high-molecular weight genomic DNAs was purified from one specimen using Qiagen Genomic-tip 100/G as per the manufacturer’s instruction. and southeastern Asia, Ompok are favorite food fish, despite the fact Privacy original distribution of the species, because fingerlings are sent over These cookies are essential for the website. Pabda fish is a freshwater catfish, with its fabulous taste and high nutritional value. [2][4] Giklaseklase sa IUCN ang kaliwatan sa duolang mibahad. Catfishes are an excellent source of omega-3 and omega-6 fatty acids, vitamins and mineral those are excellent for growing children, pregnant females and elders. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Biswas P, Jena AK, Saha H, Chowdhury TG. MaSuRCA (Maryland Super- Read Celera Assembler) v3.2.8 was used for hybrid de novo assembly [8] using both the Illumina and PacBio data. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/, https://doi.org/10.6084/m9.figshare.9827312.v1, https://doi.org/10.6084/m9.figshare.9830954.v1, https://doi.org/10.6084/m9.figshare.9831155.v1, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA552450, https://www.ncbi.nlm.nih.gov/assembly/GCA_009108245.1/, http://creativecommons.org/licenses/by/4.0/, http://creativecommons.org/publicdomain/zero/1.0/, https://doi.org/10.1186/s13104-019-4867-y. World Aquac. Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore Holt, Alvarado C, Yandell M. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. In southern Ompok is a genus of fish in the family Siluridae found in lakes and large rivers throughout South and Southeast Asia. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. https://doi.org/10.1186/s13104-019-4867-y, DOI: https://doi.org/10.1186/s13104-019-4867-y. Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. The assembled genome size of the Indian butter catfish is 718 MB as compared to in silico estimated genome size of 992 Mb. Fish, in Bangladesh where malnutrition remains a significant development challenge, is an irreplaceable animal-source food in the diet of millions. Wels (Silurus glanis). SK and RD conceptualized, designed the overall project with assistance from AS and BS. Part of our customers: the fish have code 439752 (O. bimaculatus) and 439853 So it has a great demand and high value in the market. 1479). We are produce Pabda Fish Seed at Bangla Krishi Khamar we produce for Ponds , Biofloc & RAS System Fish Farming is the fastest growing animal farming business today. 1991, 1993). The draft genome assembly was found to be 718 Mb with N50 size of 81 kb. 2012;1(2):45–55. FastQC program.https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. Cookies policy. They help to make the website usable and enable, for example, security-relevant functionalities. Pabda fish is a freshwater catfish, with its fabulous taste and high nutritional value. 2008;18(1):188–96. wide distances for stocking fish ponds. 2009;84(4):395–407. Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India, Ruby Dhar, Karthikeyan Pethusamy, Sunil Singh, Indrani Mukherjee, Ashikh Seethy, Bharoti Sengupta, Tryambak Srivastava, Sajib Sarkar & Subhradip Karmakar, Eurofins Genomics India Pvt Ltd, Bangalore, India, Vikramjit Mandal, Madhumita Karmakar & Arpita Ghosh, Department of Industrial Fish and Fisheries, Bramhananda Keshab Chandra College, West Bengal State University, Kolkata, India, You can also search for this author in that they are comparatively small. 6028). 2019. https://doi.org/10.6084/m9.figshare.9831155.v1. Omopk 2010. http://dx.doi.org/10.2305/IUCN.UK.2010-4.RLTS.T166616A6248140.en. Two pair-end libraries were constructed for Illumina sequencing and one SMRTbell library was constructed for Pacific Bioscience Sequel, single molecule, real time (SMRT, Single Molecule Real Time) sequencing platforms as mentioned in Table 1, Date file 1. Bioinformatics. It is very tasty and has high nutrition value.

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